Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRP rs4851294 chr2:100941109 C/T 1.92E-5 287 23.4 25.93 25.63 KM Plot
KIRP rs4851296 chr2:100949570 T/C 1.87E-5 287 23.4 25.93 25.5 KM Plot
KIRP rs4857590 chr3:197158304 C/T 0.000163 275 24.8 26.8 19.95 KM Plot
KIRP rs4871968 chr8:26000975 G/T 1.81E-6 285 25.02 28.88 11.43 KM Plot
KIRP rs4896991 chr6:148654418 G/A 0.000106 284 26.38 17.17 18.2 KM Plot
KIRP rs4896994 chr6:148658142 G/A 9.73E-5 286 26.4 18.07 18.2 KM Plot
KIRP rs4912341 chr1:58989802 A/G 2.41E-5 288 25.6 27.45 13.17 KM Plot
KIRP rs4912342 chr1:58989833 T/A 2.41E-5 288 25.6 27.45 13.17 KM Plot
KIRP rs4912343 chr1:58989861 A/G 2.41E-5 288 25.6 27.45 13.17 KM Plot
KIRP rs4947336 chr6:28576143 T/A 2.46E-8 282 25.57 28.02 9.77 KM Plot
KIRP rs4984716 chr16:963104 G/A 0.000113 277 26.4 25.23 14.83 KM Plot
KIRP rs4984717 chr16:963337 G/A 0.000113 277 26.4 25.23 14.83 KM Plot
KIRP rs4984719 chr16:979006 G/A 0.000113 280 26.83 25.23 16.38 KM Plot
KIRP rs4984731 chr16:992590 C/G 0.0002 289 12.82 22.8 26.8 KM Plot
KIRP rs4984739 chr16:1023988 C/T 2.54E-9 278 26.77 22.68 10.97 KM Plot